# src/examples/tsunami.c

# The 2004 Indian Ocean tsunami

The 2004 Indian Ocean tsunami was caused by a large-scale fault rupture (> 1000 km) at the Indian–Australian and Eurasian–Andaman plate boundaries. This example uses the fault model of Grilli et al, 2007 as initial conditions for a Saint-Venant solution of the subsequent tsunami. A similar setup is discussed in Popinet, 2011.

## Solver setup

The following headers specify that we use spherical coordinates and the Saint-Venant solver together with (dynamic) terrain reconstruction and the Okada fault model.

```
#include "spherical.h"
#include "saint-venant.h"
#include "terrain.h"
#include "okada.h"
```

We then define a few useful macros and constants.

```
int maxlevel = 10;
#define MINLEVEL 5
#define ETAE 1e-2 // error on free surface elevation (1 cm)
#define HMAXE 5e-2 // error on maximum free surface elevation (5 cm)
```

The maximum number of levels to use can be set as an argument to the program.

Here we setup the domain geometry. We choose to use metre as length unit, so we set the radius of the Earth (required for the spherical coordinates) in metres. The *x* and *y* coordinates are longitude and latitude in degrees, so we set the size of the box *L0* and the coordinates of the lower-left corner *(X0,Y0)* in degrees.

```
Radius = 6371220.;
// the domain is 54 degrees squared
size (54.);
// centered on 94,8 longitude,latitude
origin (94. - L0/2., 8. - L0/2.);
```

*G* is the acceleration of gravity required by the Saint-Venant solver. This is the only dimensional parameter. We rescale it so that time is in minutes.

```
// acceleration of gravity in m/min^2
G = 9.81*sq(60.);
```

When using a tree (i.e. adaptive) discretisation, we want to start with the coarsest grid, otherwise we directly refine to the maximum level. Note that *1 << n* is C for 2^n.

```
#if TREE
// 32^2 grid points to start with
init_grid (1 << MINLEVEL);
#else // Cartesian
// 1024^2 grid points
init_grid (1 << maxlevel);
#endif
```

We then call the *run()* method of the Saint-Venant solver to perform the integration.

```
run();
}
```

We declare and allocate another scalar field which will be used to store the maximum wave elevation reached over time.

`scalar hmax[];`

## Boundary conditions

We set the normal velocity component on the left, right and bottom boundaries to a “radiation condition” with a reference sealevel of zero. The top boundary is always “dry” in this example so can be left alone. Note that the sign is important and needs to reflect the orientation of the boundary.

```
u.n[left] = - radiation(0);
u.n[right] = + radiation(0);
u.n[bottom] = - radiation(0);
```

## Adaptation

Here we define an auxilliary function which we will use several times in what follows. Again we have two *#if…#else* branches selecting whether the simulation is being run on an (adaptive) tree or a (static) Cartesian grid.

We want to adapt according to two criteria: an estimate of the error on the free surface position – to track the wave in time – and an estimate of the error on the maximum wave height *hmax* – to make sure that the final maximum wave height field is properly resolved.

We first define a temporary field (in the automatic variable *η*) which we set to h+z_b but only for “wet” cells. If we used h+z_b everywhere (i.e. the default \eta provided by the Saint-Venant solver) we would also refine the dry topography, which is not useful.

```
int adapt() {
#if TREE
scalar eta[];
foreach()
eta[] = h[] > dry ? h[] + zb[] : 0;
boundary ({eta});
```

We can now use wavelet adaptation on the list of scalars *{η,hmax}* with thresholds *{ETAE,HMAXE}*. The compiler is not clever enough yet and needs to be told explicitly that this is a list of *double*s, hence the *(double[])* type casting.

The function then returns the number of cells refined.

```
astats s = adapt_wavelet ({eta, hmax}, (double[]){ETAE,HMAXE},
maxlevel, MINLEVEL);
fprintf (stderr, "# refined %d cells, coarsened %d cells\n", s.nf, s.nc);
return s.nf;
#else // Cartesian
return 0;
#endif
}
```

## Initial conditions

We first specify the terrain database to use to reconstruct the topography z_b. This KDT database needs to be built beforehand. See the *xyz2kdt* manual for explanations on how to do this.

We then consider two cases, either we restart from an existing snapshot or we start from scratch.

The next line tells the Saint-Venant solver to conserve water surface elevation rather than volume when adapting the mesh. This is important for tsunamis since most of the domain will be close to “lake-at-rest” balance.

```
event init (i = 0)
{
terrain (zb, "/home/popinet/terrain/etopo2", NULL);
if (restore (file = "dump"))
conserve_elevation();
else {
conserve_elevation();
```

The initial still water surface is at z=0 so that the water depth h is…

The initial deformation is given by an Okada fault model with the following parameters. The *iterate = adapt* option will iterate this initialisation until our *adapt()* function above returns zero i.e. until the deformations are resolved properly.

```
fault (x = 94.57, y = 3.83,
depth = 11.4857e3,
strike = 323, dip = 12, rake = 90,
length = 220e3, width = 130e3,
U = 18,
iterate = adapt);
}
}
```

The 4 other fault segments are triggered at the appropriate times (seconds converted to minutes).

```
event fault2 (t = 272./60.) {
fault (x = 93.90, y = 5.22,
depth = 11.4857e3,
strike = 348, dip = 12, rake = 90,
length = 150e3, width = 130e3,
U = 23,
iterate = adapt);
}
event fault3 (t = 588./60.)
{
fault (x = 93.21, y = 7.41,
depth = 12.525e3,
strike = 338, dip = 12, rake = 90,
length = 390e3, width = 120e3,
U = 12,
iterate = adapt);
}
event fault4 (t = 913./60.)
{
fault (x = 92.60, y = 9.70,
depth = 15.12419e3,
strike = 356, dip = 12, rake = 90,
length = 150e3, width = 95e3,
U = 12,
iterate = adapt);
}
event fault5 (t = 1273./60.)
{
fault (x = 92.87, y = 11.70,
depth = 15.12419e3,
strike = 10, dip = 12, rake = 90,
length = 350e3, width = 95e3,
U = 12,
iterate = adapt);
}
```

## Outputs

### At each timestep

We output simple summary statistics for *h* and *u.x* on standard error.

```
event logfile (i++) {
stats s = statsf (h);
norm n = normf (u.x);
if (i == 0)
fprintf (stderr, "t i h.min h.max h.sum u.x.rms u.x.max dt speed tn\n");
fprintf (stderr, "%g %d %g %g %g %g %g %g %g %ld\n",
t, i, s.min, s.max, s.sum, n.rms, n.max, dt, perf.speed, grid->tn);
```

We also use a simple implicit scheme to implement quadratic bottom friction i.e. \displaystyle \frac{d\mathbf{u}}{dt} = - C_f|\mathbf{u}|\frac{\mathbf{u}}{h} with C_f=10^{-4}.

```
foreach() {
double a = h[] < dry ? HUGE : 1. + 1e-4*dt*norm(u)/h[];
foreach_dimension()
u.x[] /= a;
```

That is also where we update *hmax*.

```
if (h[] > dry && h[] + zb[] > hmax[])
hmax[] = h[] + zb[];
}
boundary ({hmax, u});
}
```

### Snapshots

Every 60 minutes, the h, z_b and *hmax* fields are interpolated bilinearly onto a *n x n* regular grid and written on standard output.

```
event snapshots (t += 60; t <= 600) {
#if !_MPI
printf ("file: t-%g\n", t);
output_field ({h, zb, hmax}, stdout, n = 1 << maxlevel, linear = true);
#endif
```

We also save a snapshot file we can restart from.

After completion of the simulation, doing

`make tsunami/plots`

will generate the inline plots such as this one:

```
# We first split the large standard output file into its subfiles (as
# defined by the "file:" keyword, see tsunami.c
! awk '{ if ($1 == "file:") file = $2; else print $0 > file; }' < out
set term pngcairo enhanced size 700,700 font ",8"
set output 'maximum.png'
# this sets the color palette to "jet"
set palette defined ( 0 0 0 0.5647, 0.125 0 0.05882 1, 0.25 0 0.5647 1, \
0.375 0.05882 1 0.9333, 0.5 0.5647 1 0.4392, \
0.625 1 0.9333 0, 0.75 1 0.4392 0, \
0.875 0.9333 0 0, 1 0.498 0 0 )
# here we plot the value of hmax ($5) but only for wet cells
# (i.e. h = $3 > 1e-3), dry cells take a 'no data' value i.e. 1e1000
# We use only the last output file (i.e. 't-600' minutes = 10 hours)
unset key
set size ratio -1
set xrange [67:105]
set yrange [-10:25]
set pm3d map
set logscale cb
set cbrange [0.1:10]
splot 't-600' u 1:2:($3 > 1e-3 ? $5 : 1e1000)
# we trim the image
! mogrify -trim maximum.png
# we remove the subfiles of tsunami/out
! rm -f t-*
```

### Movies

This is done every minute (*t++*).

We use the *mask* option of *output_ppm()* to mask out the dry topography. Any part of the image for which *m[]* is negative (i.e. for which *etam[] < zb[]*) will be masked out.

```
event movies (t++) {
scalar m[], etam[];
foreach() {
etam[] = eta[]*(h[] > dry);
m[] = etam[] - zb[];
}
boundary ({m, etam});
output_ppm (etam, mask = m, min = -2, max = 2, n = 512, linear = true,
file = "eta.mp4");
```

After completion this will give the following animation

We also use the *box* option to only output a subset of the domain (defined by the lower-left, upper-right coordinates).

```
output_ppm (etam, mask = m, min = -2, max = 2, n = 512, linear = true,
box = {{91,5},{100,14}}, file = "eta-zoom.mp4");
```

And repeat the operation for the level of refinement…

```
scalar l = etam;
foreach()
l[] = level;
output_ppm (l, min = MINLEVEL, max = maxlevel, n = 512, file = "level.mp4");
```

…and for the process id for parallel runs.

```
#if _OPENMP || _MPI
foreach()
etam[] = tid();
double tmax = npe() - 1;
output_ppm (etam, max = tmax, n = 512, file = "pid.mp4");
#endif // _OPENMP || _MPI
}
```

### Tide gauges

We define a list of file names, locations and descriptions and use the *output_gauges()* function to output timeseries (for each timestep) of \eta for each location.

```
Gauge gauges[] = {
// file lon lat description
{"coco", 96.88, -12.13, "Cocos Islands, Australia"},
{"colo", 79.83, 6.93, "Colombo, Sri Lanka"},
{"hani", 73.18, 6.77, "Hanimaadhoo, Maldives"},
{"male", 73.52, 4.18, "Male, Maldives"},
{"gana", 73.17, -0.68, "Gan, Maldives"},
{"dieg", 72.38, -7.3, "Diego Garcia, UK"},
{"rodr", 63.42, -19.67, "Rodriguez I., Mauritius"},
{"loui", 57.5, -20.15, "Port Louis, Mauritius"},
{"lare", 55.3, -20.92, "La Reunion, France"},
{"hill", 115.73, -31.82, "Hillarys, Australia"},
{"sala", 54, 17, "Salalah, Oman"},
{"laru", 55.53, -4.68, "Pointe La Rue, Seychelles"},
{"lamu", 40.9, -2.27, "Lamu, Kenya"},
{"zanz", 39.18, -6.15, "Zanzibar, Tanzania"},
{"chen", 80.3, 13.1, "Chennai, India"},
{"para", 86.7, 20.26, "Paradip, India"},
{"visa", 83.28, 17.68, "Visakhapatnam, India"},
{"koch", 76.26, 9.96, "Kochi, India"},
{"morm", 73.8, 15.42, "Mormugao, India"},
{"okha", 69.08, 22.47, "Okha, India"},
{"tuti", 78.15, 8.8, "Tuticorin, India"},
{"taru", 99.65, 6.702, "Tarutao, Thailand"},
{"tapa", 98.425, 7.765, "Tapaonoi, Thailand"},
{NULL}
};
event gauges1 (i++) output_gauges (gauges, {eta});
```

As before gnuplot processes these files to produce this image:

```
reset
set term svg enhanced size 625,800 font ",10"
set multiplot layout 5,1 scale 1,1.1
set xrange [3:8]
set key bottom right
set title 'Hanimaadhoo, Maldives'
plot 'hani' u ($1/60.):2 w l t 'modelled', \
'../hanires.txt' u 1:($2/100.) w lp t 'observed'
unset key
set title 'Male, Maldives'
plot 'male' u ($1/60.):2 w l t 'modelled', \
'../maleres.txt' u 1:($2/100.) w lp t 'observed'
set title 'Gan, Maldives'
plot 'gana' u ($1/60.):2 w l t 'modelled', \
'../ganares.txt' u 1:($2/100.) w lp t 'observed'
set title 'Diego Garcia'
plot 'dieg' u ($1/60.):2 w l t 'modelled', \
'../diegres.txt' u 1:($2/100.) w lp t 'observed'
set title 'Columbo, Sri Lanka'
set xrange [2.5:8]
plot 'colo' u ($1/60.):2 w l t 'modelled', \
'../colores.txt' u 1:($2/100.) w lp t 'observed'
unset multiplot
```

### Google Earth KML file

We also generate images and a Keyhole Markup Language file which can be imported into Google Earth to superpose the evolving wave height field on top of Google Earth data.

```
event kml (t += 15)
{
static FILE * fp = fopen ("eta.kml", "w");
if (t == 0)
fprintf (fp,
"<?xml version=\"1.0\" encoding=\"UTF-8\"?>\n"
"<kml xmlns=\"http://www.opengis.net/kml/2.2\">\n"
" <Folder>\n");
fprintf (fp,
" <GroundOverlay>\n"
" <TimeSpan>\n"
" <begin>2004-12-26T%02d:%02d:00</begin>\n"
" <end>2004-12-26T%02d:%02d:00</end>\n"
" </TimeSpan>\n"
" <Icon>\n"
" <href>eta-%g.png</href>\n"
" </Icon>\n"
" <LatLonBox>\n"
" <north>35</north>\n"
" <south>-19</south>\n"
" <east>121</east>\n"
" <west>67</west>\n"
" </LatLonBox>\n"
" </GroundOverlay>\n",
8 + ((int)t)/60, ((int)t)%60,
8 + ((int)t + 15)/60, ((int)t + 15)%60,
t);
fflush (fp);
scalar m[], etam[];
foreach() {
etam[] = eta[]*(h[] > dry);
m[] = etam[] - zb[];
}
boundary ({m, etam});
char name[80];
sprintf (name, "eta-%g.png", t);
output_ppm (etam, file = name, mask = m,
min = -2, max = 2, n = 1 << maxlevel, linear = true);
if (t == 600)
fprintf (fp, "</Folder></kml>\n");
}
```

## Adaptivity

And finally we apply our *adapt()* function at every timestep.

`event do_adapt (i++) adapt();`