# Pages for peer reviewed publications

This page gives an overview of my pages that were used for published
articles, etc.


## A fourth-order accurate adaptive solver for incompressible flow problems

<img style = float:right
src="https://ars.els-cdn.com/content/image/1-s2.0-S0021999122003138-gr020.jpg"
alt="drawing" width="400px"/>

By: J. Antoon van Hooft and Stéphane Popinet

Year: 2022

In: Journal of Computational Physics

DOI: [https://doi.org/10.1016/j.jcp.2022.111251]()

* Chapter 2, solver formulation  
[The implementation of the 4th-order accurate solver](nsf4t.h)
* Chapter 3, tests, experiments and examples
1) [Adaptive Convergence rates](test_conv.c)  
2) [Two-dimensional vortices of Taylor and Green](tg4.c)
3) [Three-dimensional vortices of Antuono](antuono4.c)
4) [Viscous boundary layer](visc_boun.c)
5) [Shear instability](doublep.c)
6) [Rising buoyant plume](rise.c)
7) [Dipole-wall collision](dip.c)
8) [Head-on collision of two vortex rings](ring4.c)
* Appendix  
  [Non-smooth advection](upat.c)
  
## Detecting nighttime inversions in the interior of a Douglas fir canopy

<img style = float:right
src="canopy/pltend.png"
alt="drawing" width="300px"/>


By: B. Schilperoort; M. Coenders-Gerrits; C. Jiménez Rodríguez; J.A. van Hooft; B.J.H. van de Wiel; H. Savenije 

Year: 2022

in: Agricultural and Forest Meteorology

DOI: [https://doi.org/10.1016/j.agrformet.2022.108960]()

* [A model for Layer formation in a forest canopy](canopy.c)

~~~literatec
  
    

~~~

## Modeling the Atmospheric Diurnal Cycle
<img style = float:right src="http://www.basilisk.fr/sandbox/Antoonvh/front_page/front_page.png" alt="drawing" width="250px"/>

PhD thesis by Antoon van Hooft

Year: 2020 

At: TU Delft repository

DOI: [https://doi.org/10.4233/uuid:e45cea45-8915-4a11-b8fd-389cb3e19d22]()

In order of appearance:    

* [Front cover](front_page.c)  
* [Ouverture: Root finding](root-finding.c)
* [Entr'acte 1: The Mandelbrot set](mandelbrot3.c)  
* [Chapter 2 is based on an article](README.pubs#towards-adaptive-grids-for-atmospheric-boundary-layer-simulations)  
* [Entr'acte 2: A dipole collision with a wall](lamb-dipole.c)  
* [Chapter 3 is based on an article](README.pubs#adaptive-cartesian-meshes-for-atmospheric-single-column-models)  
* [Entr'acte 3: The collision of two vortex rings](two_rings.c)  
* [Chapter 4 is based on an article](README.pubs#an-idealized-description-for-the-diurnal-cycle-of-the-dry-atmospheric-boundary-layer)  
* [Entr'acte 4: Error estimation for a Poisson solver](poisson_f.c) 
* Encore: This section is based on the experience writing these pages 

## A Note on the Scalar-Gradient Sharpening in the Stable Atmospheric Boundary Layer

<img style = float:right
src="gs.png"
alt="drawing" width="230px"/>

By: J. Antoon van Hooft

Year: 2020

In: Boundary-Layer Meteorology

DOI: [https://doi.org/10.1007/s10546-020-00516-x]()

[Scalar-gradient sharpening by the self advection of a dipolar vortex.](gradient-sharpening.c)
    
## An Idealized Description for the Diurnal Cycle of the Dry Atmospheric Boundary Layer

<img style = float:right
src="http://www.basilisk.fr/sandbox/Antoonvh/LESisosurfaces2.png"
alt="drawing" width="400px"/>

By J. Antoon van Hooft, Peter Baas, Maurice van Tiggelen, Cedrick
Ansorge and Bas J.H. van de Wiel.

Year: 2019

In: Journal of the Atmospheric Sciences

DOI: [https://doi.org/10.1175/JAS-D-19-0023.1]()

In order of appearance,

* [The effects of the pressure-gradient force, using a Single-Column Model (SCM).](diurnalSCM.c)
* [The effect of including a layered soil-heat storage model in the SCM.](diurnalSCMsoil.c)
* [Large-eddy simulation of the diurnal cycle with a weak wind forcing.](diurnalLES.c)

## Adaptive Cartesian Meshes for Atmospheric Single-Column Models

<img style = float:right
src="https://www.geosci-model-dev.net/11/4727/2018/gmd-11-4727-2018-f08-web.png"
alt="drawing" width="500px"/>

By J. Antoon van Hooft, Stéphane Popinet and Bas J.H. van de Wiel

Year: 2018

In: Geoscientific Model Development

DOI: [https://doi.org/10.5194/gmd-11-4727-2018]()

In order of appearance,

* Results *Sect 3.1*, The Laminar Ekman-spiral test case;
    a. [using a fixed and equidistant grid](ekmanfg.c)  
    b. [using an adaptive grid](ekman.c)
* Results *Sect. 3.2*, The GABLS1 case;
    a. [using an adaptive grid](GABLS1.c)
    b. [using a fixed and equidistant grid](GABLS1fg.c)  
* Results *Sect 3.3*, The GABLS2 case;
    a. [using an adaptive grid](GABLS2.c)
    b. [using a fixed and equidistant grid](GABLS2fg.c)
    
## Towards Adaptive Grids for Atmospheric Boundary-Layer Simulations
<img style = float:right
src="https://media.springernature.com/lw785/springer-static/image/art%3A10.1007%2Fs10546-018-0335-9/MediaObjects/10546_2018_335_Fig7_HTML.gif"
alt="drawing" width="350px"/>

By: J. Antoon van Hooft, Stéphane Popinet, Chiel C van Heerwaarden,
Steven J.A. van der Linden, Stephan R de Roode and Bas J.H. van de
wiel.

Year: 2018  

In: Boundary-layer meteorology.

DOI:
[https://doi.org/10.1007/s10546-018-0335-9](https://doi.org/10.1007/s10546-018-0335-9)

In order of appearance,  

* [Section 2.1: Generate an example tree grid and output the relevant cells](The_Tree_Grid_Structure_in_Basilsik)
* [Section 2.2: Analysis of a data slice from a 3D turbulence simulation](slice.c)  
* [Chapter 3: DNS of the growth and decay of a convective atmospheric Boundary layer using an Adaptive grid](freeconv.c)  
* [Chapter 3: DNS of the growth and decay of a convective atmospheric Boundary layer in fixed-and-regular-grid mode](404)  
* [Chapter 4: LES of an atmospheric boundary layer filled with a radiant smoke cloud](smoke.c)  
* [Appendix 1: DNS of a lid driven cavity in two dimensions using an adaptive grid](lid.c)  
* [Appendix 1: DNS of a lid-driven cavity in two dimensions with a fixed-and-regular grid](lidfg.c)